Scaffold Ga0209055_1000733

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1000733
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22621
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010015	Metagenome	309	Y
F011157	Metagenome / Metatranscriptome	294	Y
F014716	Metagenome	260	Y
F022047	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100073318	F022047	GGA	MSRIVSSAAWRRILLCSIVVAAIAASAPAQTPSNLRVVHTVDKATPPTAELSGRVYNDGTVDVIDVYVNAAAVDQSGKVLAQGIPYVGMVPARGSAPFKARVPIVPGATGYRVGINSFRFAFGRDAP
Ga0209055_100073320	F011157	GGAG	MKAVAVTLALVLAGCAHAAGVRYTFTPCNPGFQDTVRACLYEAGIGGPVVAYDFYADSGIIEKHWKQQYESCMFRRGYHQIDGATTWHPRERFNGATGWPWPNDPPKSAWVWVRTAGTGDRHYYDAVCEP
Ga0209055_100073322	F014716	AGG	VVVTLPIGTIKRILDRVSSLPEQASEFILGEALARILTRDDIETTSPTPATKSLPKLPQNIVSALEKARDDKTLIDGGKHVGHLGHYDFMTLRDWCRAMRLGSDAAAVEAAVVAASK
Ga0209055_100073330	F010015	GGAG	MLTELLAFLDELLSYLESVHDVRGEEGSPARRSPEIERLTQKTRALRNAVSTERQKH