Scaffold Ga0209055

Basic Information
Taxon OID	3300026309 Open in IMG/M
Scaffold ID	Ga0209055_1000698 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026309 Open in IMG/M

Scaffold ID

Ga0209055_1000698 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23293
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (41.94%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23293

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (41.94%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F010312	Metagenome	305	N
F011833	Metagenome	286	Y
F014110	Metagenome / Metatranscriptome	265	Y
F016379	Metagenome	247	Y
F031429	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100069816	F031429	N/A	MARELSEHSLPKPSRQDASEDAKPPRAGPGFLRLNSMAYRLEMLLITIILLVVLFYWRLFVVKDLNLLGTVFWIIFPDLASFIPIGLAMRGAKEWPSWGPVVYNFFHTLLVWIPVFAIWSILSGAVQWTLLGWAGHITADRSVGYYLRAASKRRVD
Ga0209055_100069821	F011833	AGGA	MKAFIASFAKGQVLLLAPQPILLTLIIFGKISLYYSAPVIISLAVLWGWFDYSGKVQRRGASVLKKLERLVDDFGWLNFQEGGGAGNEMVVSLLDKASFGSSTLTTPQLATATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLTSLENEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSETKVRALEVDPWFKTGTEISETKQPPQ
Ga0209055_100069822	F016379	N/A	MPGYPERFVKLLYGIIMAQFIVIATLLAGFSNEYLSNIYFRIWVDGNFPQLGLLLTGQVDALLIGMALGGTILLIQRVKNEASIAERTTATLGRPSSLGQSSDLLPNHATRTTIVEVARETPEQVLGELDKHDF
Ga0209055_10006983	F010312	N/A	MLRMFRLTLPAALLVSLTWMTLFTDSARQAVINSLGANANIIIFILGLFLVLGLYWVMGVYERKILYENHRTRPAF
Ga0209055_10006986	F014110	AGGAG	VDLARLPGKVGPAVDFLREHVKSLKGHVSTKGNQIQVEGLKHKEVKLLLHKFLRHNGLDDHRVLSQSGILEIVPPHLVTHTKQGAATTPPPAAATMPYLFPGAPVPVAPDKKRRKKS
Ga0209055_10006987	F006299	N/A	LASSQQLVRTLLTLSAEVVTRELPEIVEFNKLKSRTAEEALAELVSELGIVYVTAITRQGCSGCETQKPLFRTLAEKMSRENPEKIRFRSYHVNYQDGDKRESWNSKRIFGHAAYPTYTIHVKSHVGPLEIYRSVYPPMEELEKQIKESFELAEFYKVEAEAASRSRTDEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209055_1000698

Overview

Ecosystem & Geography

Associated Families

Sequences