Scaffold Ga0209055_1000644

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1000644
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24322
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002993	Metagenome / Metatranscriptome	514	N
F006078	Metagenome	382	Y
F014244	Metagenome / Metatranscriptome	264	N
F099075	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100064413	F099075	GAG	MGTVRQTPSSSQNVNPTDHPIPQGLSDRRVDGPLAVISSAPVRMPELVRTEVGLLLLISIEIVSAIIQLSGFARQNPFMPVFGYETAASVAVLSTIIFFAGGAMIVTGRKPFGSKHSEQSVIGLAVWSAMALFDFFLLPYWIPTLSVVLPGYVVFGLTGIVETAISVTAIALLTYHLQSRTGKMLLWLACGIGLGIAIAFDSQNLRLFPYYSNEIQKTIFSLNGLSPALFATAYLVLWSRIRKESAVSSPINRP
Ga0209055_100064421	F006078	N/A	VTPLEPKVKVASQSVFYALHARDGTCASGCGVSQTGVAEIVFGVEIVEWDLCSACLSRTGFLEYFNSLPSATPREAEETKILLGISNETFERQNRTAPRIN
Ga0209055_100064422	F014244	N/A	MVAFGEQTYTLLSNEARARGITIQELLRAVVIPDWFKAKYEPVPRQSPIIERRTREEEPVVPYSFSNKLRY
Ga0209055_100064426	F002993	GGA	MAYGLAEGFRKTAVRLGGKKKSQAVVIATFGNHFTLNDALEKFRKEGLTFETEKGHIVKIFLDKNTKERAEQVRTIIRENFGYVEPL