Scaffold Ga0209055_1000450

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1000450
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29063
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (65.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F004288	Metagenome / Metatranscriptome	445	Y
F014602	Metagenome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100045028	F004288	AGGA	VGTLFPAREPAMNGAHFDGRVEKRLPTSVPVYLASLEEPRSRERTLTENVSPHGACVISQRFWQSGEESLITPLTGEFRQVGRVIYCLPTAGDRFCVGVEFPDRTVKWGEHSSD
Ga0209055_100045032	F014602	GAGG	MIDSWTKKSANGKTVTFKIEGDRKSGFVYSAGMDGRDIKEITGSLKVLTREDVEIMFASYVAGS
Ga0209055_100045033	F000232	N/A	MKHPRQTRRAPQTHPSASAVPSYHRILVKHGLIEKNLSISHAYEVFLKVGADPEVEKLRRKVELDNKMKHVPALHLATAMALQGMTKQELEALKLRIEKKRV