Scaffold Ga0209055

Basic Information
Taxon OID	3300026309 Open in IMG/M
Scaffold ID	Ga0209055_1000061 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026309 Open in IMG/M

Scaffold ID

Ga0209055_1000061 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67958
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (73.85%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

67958

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (73.85%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001330	Metagenome / Metatranscriptome	721	Y
F010826	Metagenome	298	Y
F037649	Metagenome	167	N
F040546	Metagenome	161	N
F088599	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100006110	F010826	GAG	VKDPLAIGLGALACGAGLGGGTIVAALVIVRTLEHHVSASHYQESAADPVLAGTLAGLAVGATFGWRRSRWLDNLWQRGVIAVLSSVGALLFGFIAWPIDHLLGVAGLAVWGIASFVLGGAASAWAVRGSRDDALRDTE
Ga0209055_100006126	F037649	N/A	MRLVRARRSPVTPSRVAPFFLTSLVVAACGGDRSRSPTCGLALLVGPRMIQQQLTILPFVLTDAPRGLSASLPALVAGTSHQGEVTVAYAGSRLVLTYQGPNFPPFPTDSAVYGLLVVDDSTQRAQGVLIYESVRPPPSFPQLGTVRGGGTDKTIPLYGVRVDWPSVSNSRCPLLGPPAQAPR
Ga0209055_100006127	F001330	N/A	MLDSPLLPLLIALCRGALQGAPIDGTWELARIFRSGPTAASHTVPIDSTVYLRLTLKTMPGEWITGRLYRRYHGKEERSKIEAGPLGHTGRYIIGADLDFPASQKARTAAWLSGDALRLGTPFVPDADSLELRRVSTDAPYPATVTEVVTAR
Ga0209055_100006129	F088599	N/A	MSTRARAATAIALATALACNQGLEPALTPTSCPRDFVGVCGTVSFVGQVPESTAKVFVVAFDTFPRSQNDLFKFKPQLNPAILPLGGPPFFYTLPLPPGRYEWVLAVWQKQGALSPTNADTLLRETGFYRDAGDTTPHGSGIVIVNAGTSTDSIDFVVDFNSMHRVCDYFPPCP
Ga0209055_100006136	F040546	AGGAG	MLKKIGAALVAVGLFLPYSPDVRVIASVWHNAAEVLFQGFPVLLAFVYALHTFVPPLARFHQRLGQALHGALRMVYFVLVGAYLATAAAGRADWPAVGPVLAALVITGGLLYWGQGRGTKAERLPLLLLIAGGVPLIAYFIETLRAGALAYGGWVFTAGYVLALVGEVQGLRAAPRIAHG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209055_1000061

Overview

Ecosystem & Geography

Associated Families

Sequences