Scaffold Ga0209469_1004088

Overview

Basic Information

• Taxon OID: 3300026307
• Scaffold ID: Ga0209469_1004088
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6379
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012766	Metagenome / Metatranscriptome	277	N
F027130	Metagenome / Metatranscriptome	195	N
F097014	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209469_10040881	F097014	N/A	MHCDVMSRSCVRDITLMLGLRRRKTNDGGSDQNGDVARLFFDSFSKRVGIVEDGLKNMSTEVNKLKISMDRSQLSDLVLLERLQKAEVLVRESLNWTKEVAGIWRELREMPVTKEERSVVTSESSAGPPRVDAEEAGLSRRV
Ga0209469_10040884	F012766	GGAGG	MEVLREEEVLQLEEDLLRRLEEKLAPLVERAAVDAAKITMHQLRLDLMNHISRHEDTIRRLKRTESALNHIPTTR
Ga0209469_10040885	F027130	GGAGG	VDVHRNCSLETREENRMLGKENSKENKLNEYFRRRCSNYERFLCDRVWECALCAQQVGKVETLELATVTKVEGLRRR