NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209469_1002264

Scaffold Ga0209469_1002264


Overview

Basic Information
Taxon OID3300026307 Open in IMG/M
Scaffold IDGa0209469_1002264 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9376
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002498Metagenome / Metatranscriptome553Y
F004048Metagenome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0209469_10022648F002498AGGAGGLFFDAMQRLGLPNEVKQAAVALYLDFKSRPIGEYNADHKNLEIFLIASVSLAAKAMGDLRTDHEFESKMFVSREKLADAEERIIKSFGVQDSIVPFPDLVSQLTKRQIESMADGFAERGLVSSNEREELVRRTYDYLDAAVERGLGPKMSYRGRAAGVMLKAVRDLELQIPEMDIARAAGFDKRTMATNADVIDALLKDSKSSLRKET
Ga0209469_10022649F004048AGCAGLDRLRRRSGYEKIKTGPSPDDNALLQLTRELSAQFQMPYWYRQIVWGRLDRYHSTGGIISKPTILSKETVTVPGSLPVAELMLPEYLKGKMSLDEWKILIALHMVRFKVYNKGRMSRLLGKIALAPRELFFLLLFEIPAAASGGLSGPVLYFPSPIFLLAALWIRRSIRKSLKRQEFELDRKVAKQLGTQQVSQTLEKIQNLDQKRIPTNLRLPFVAYWNPSIKERIGELSNPRLEDLPRPSRIPKIGLRGRVIITAAGFAIFWGSGLVAGNIYARGQSMVVCMDTTCSALVVIAAVGFWIAIIGGIGIVVWILRRFL
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