NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209688_1020094

Scaffold Ga0209688_1020094


Overview

Basic Information
Taxon OID3300026305 Open in IMG/M
Scaffold IDGa0209688_1020094 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1291
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011962Metagenome285Y
F045940Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209688_10200941F011962N/AMAALGTAGCVAPLGLGYTIERQQLRVQFVPAPEPRIRIEAEYALKNTGNQPLCELELRLPGRRRFHFEEPHATWDATVLATGTSTEHPRNALISLPQQWKVSGRHTLRLSVQYLPAATGETALSFTADAFFLPAEGWSPELLPSRGLFATGGVPPKKWEMNVSVPDGFLVHTSGRQTKTSRKNGEMNIRAAQSVNDHYPAVIAGRYTSSEIGGKEKIILWTRKPQEAAGLRGASDALVRTMEAYDSMFGARGK
Ga0209688_10200943F045940N/AEPVILEIAKVDQLDAISTDAVMLRLVGLSDPAVDFILHRRLKGQRTMSSAEIGRLKNTGLTEKQILERINEGMTDAQADKEAASREAKRNHSGTDFKRVRGRRR

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