NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209688_1004915

Scaffold Ga0209688_1004915


Overview

Basic Information
Taxon OID3300026305 Open in IMG/M
Scaffold IDGa0209688_1004915 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2398
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015941Metagenome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0209688_10049152F015941AGGAGMKLNFRSKSLLAVVLAISIAATGCSAQWINIALQDLPVLTQMSLNIATLVSAFASGKQANPGDVAVIQNISAQASRDLNLLQSLYADYKASANVTTLQKIQSVISDMNHNLPALLQSAHISNALLSARISAAVNLILSTVNNFAALMPQAAPQSAPTTGRKLITEPPNTAQLKQGWNQQVCAASGSEAFDVGLTNCAMR

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