Scaffold Ga0209240_1018486

Overview

Basic Information

• Taxon OID: 3300026304
• Scaffold ID: Ga0209240_1018486
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2661
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F000440	Metagenome / Metatranscriptome	1137	Y
F030676	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_10184864	F000217	AGGAG	MNARIVTFSSRGDTTLLEYDPATADMEEVNRVIAEYEGKTGAQPFDMATGERIEKVTRDQNEVLMVHPIAGG
Ga0209240_10184865	F030676	GGA	MTSAVLSVIAFLALFAWRFVFAGLRRGPMAREIAPPHRQQTNILEQSLDMLQLAGVAVIPDNRAENGSNSAKPTTPKNCAKTYLRHIIALTGATQMGSCYVLDLGTTRFHVRDRYVRRMRDVTGPKCEYEETCFYAAEKEMPKSEHIATALLQLKNNPALFDKWAAQTGAFKADGQAFSSAQ
Ga0209240_10184866	F000440	N/A	MQTKCTPAQRAAEYLKRIATLTGAQRVRGDSYWLAAGHKNFLVDYKFVRLISRRDKSTCFSVASDPNVPSAEVVASALLQLKNNPKLFKKWRKQPGRTFKANGKMFSDLYQVTRDET