Scaffold Ga0209240_1010805

Overview

Basic Information

• Taxon OID: 3300026304
• Scaffold ID: Ga0209240_1010805
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3458
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004041	Metagenome / Metatranscriptome	456	Y
F004744	Metagenome / Metatranscriptome	425	Y
F015902	Metagenome / Metatranscriptome	251	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_10108051	F004744	GGAGG	MKKLAILGIIGGAAILTAAPLSLQWSQKNVALSLDSAKAG
Ga0209240_10108052	F004041	AGGAGG	MAPKSDKSFAKATTKLGLATVIAALWMTAVPITGAVADVQISAARAQAIQQCNRLAARYPLHDWGNTQIHLYRSCMAQRGQQE
Ga0209240_10108053	F015902	GGAGG	MGKVLFSLAFATALLGVASSEASAAAGFVCQAVGPRSVGYGRAYFVADAKWQALIRCERYSGICIISYCVPY