Scaffold Ga0209240_1010545

Overview

Basic Information

• Taxon OID: 3300026304
• Scaffold ID: Ga0209240_1010545
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3499
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009836	Metagenome / Metatranscriptome	312	Y
F021575	Metagenome / Metatranscriptome	218	Y
F024189	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_10105453	F021575	GGA	VRNKSAPPKWSKLWRDLPQSCDYFGAYTTEQLERMDQEFTAAVERAFRAGDESEMAATATYDLRRR
Ga0209240_10105455	F024189	GAGG	MPITQFLGNAKFDPETRRIMGLAFEMTRLALGLADRGDRANEVVAKRIIELAKTGELNPDVLCEAVVKEFGEQRL
Ga0209240_10105457	F009836	AGGA	MSTKLACSVVPTVEICPNCKSEMTIREVTPILLADGFEGVTYRCKSCRSEMKRTFKRCSGAWELVTLPSFFALRPEAKKKTATEANQNQGLA