Scaffold Ga0209240

Basic Information
Taxon OID	3300026304 Open in IMG/M
Scaffold ID	Ga0209240_1002417 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026304 Open in IMG/M

Scaffold ID

Ga0209240_1002417 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7082
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (26.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7082

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (26.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000861	Metagenome / Metatranscriptome	857	Y
F005519	Metagenome / Metatranscriptome	398	Y
F043529	Metagenome	156	Y
F053472	Metagenome	141	Y
F077826	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_10024171	F005519	AGGA	MRPVAFGEALPAGTRLTLFSDDKPDRFFTVIKFWMDETSGVALALKTGVPSYQVEDEEGRTHLLIHLPIEEDEDRWCLWRPDHAGFDSKSIFESALIEE
Ga0209240_100241713	F000861	N/A	MTSLPAKVIAIEKRGDHYQVIVQIGTKYRGSFNTLAFGEIKPYSGSLKDGRLDLVYYRDPRLSVGEQFPLWTLH
Ga0209240_10024172	F053472	N/A	MPTIPQSIQTLFNDHRARLTAVSAAPGVVGLSLDLDQIGATYLSKAVQILVRPKYAADSNTGSSPEDKISSLASSVSRLSRQVRPLAPNDTFYSAFTSGSVAAAQDVFLSIFGLTMPS
Ga0209240_10024174	F077826	N/A	MNLKLRELSRTILKLNSGGSLESLYTNYSVCLRHLTGYLSQKDDSEKKALLAVLRNMAFNKHQDLGRPVDEATIAREMKDTFRRLILQVLEATTKEDIDTLYEAIEKGEIK
Ga0209240_10024176	F000861	N/A	MTSLPAKVIAIEERGDQYQVIVQISTKYRGSFNTLAFGEIKPYIGSLKDGRLDLVYYRDPGLSVGDQFLLWTLH
Ga0209240_10024177	F043529	GAG	MSTFTPSPEFDYYYKACRKGDREAKAVAVSYSPVGVLADASEITGLPRDNFEVHEISNAEFEALHSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209240_1002417

Overview

Ecosystem & Geography

Associated Families

Sequences