Scaffold Ga0209240_1001689

Overview

Basic Information

• Taxon OID: 3300026304
• Scaffold ID: Ga0209240_1001689
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8501
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005101	Metagenome / Metatranscriptome	412	Y
F007168	Metagenome / Metatranscriptome	356	Y
F015010	Metagenome / Metatranscriptome	258	Y
F029059	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_10016893	F007168	GGCGG	MREKIGYCRQKAAECAARAEQATDKDMRALFLRFRDSWLSAAKRYESSAANAPDEGPERRPSSFAPEPSTHDWRSHPNDARTDTTAERLGAS
Ga0209240_10016894	F005101	GAG	MKEEFATILDAMRGAQVELADYLASADHNSELTIARLVGILDRREVIRAMRLLRALERPAVAPQITLAQAS
Ga0209240_10016895	F029059	GGGGG	MGRSDECRRYAAECLEMASALHDPKARATLLHMAQVWLRLAGQGDLPNAEAKCRQGEA
Ga0209240_10016896	F015010	N/A	METSSEYRRFAQECHRLAREAKTERHRKIMQEMAQAWERLAKETDGEGAHASP