Scaffold Ga0209240

Basic Information
Taxon OID	3300026304 Open in IMG/M
Scaffold ID	Ga0209240_1000001 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026304 Open in IMG/M

Scaffold ID

Ga0209240_1000001 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	207360
Total Scaffold Genes	175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	131 (74.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

207360

Total Scaffold Genes

175 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

131 (74.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006633	Metagenome / Metatranscriptome	368	Y
F011961	Metagenome / Metatranscriptome	285	Y
F079638	Metagenome / Metatranscriptome	115	Y
F094235	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_1000001108	F006633	GGAGG	VPRLSIRFQTLAATCFAVALLTCVLAAPLSAQEKRAPQTAGVDNTKMGPYRALAQLAYAASQKGDHAGAATLAKILERAWDKAEDYGGDTALSKTNHALFEQIDKAMDQFISLFLDHTAAGPDPAKLKSAYSQYLEKLKLAD
Ga0209240_1000001124	F079638	GAGG	MADSNFSSRDRSQEQGLQRNSGRDIQYLLRGEEQLLQAISARAPLAEVLHKICDALDSEIGNMMSVIALLNDDAAGLEAIAKSASLFGLHKFCSANVVGGNDESLGSLEMYCSVPRRPFLNEVQLIERATCLAAVAIKRHNEAGIYSSRKGEARNQGLSPDFHRTSGY
Ga0209240_1000001146	F094235	GGGGG	MKHFMTEEWVDFVNEAVAASKRHQMERHLQEGCPRCKKLISLWQKVRQTAKSAAECEPPEQAVRIAKAGFSAMRLAGKPARSPRLVEVLFDSFLQPLVQGARSSGSGMRQMLYRAEPYQVDLQIEAKPGGNKLVVTGQLLDLRNPDVPGRDVSVIISNLRGHVVRTVTNEFGEFREEIQSSSDLELKLLGEDENAVIISLRDTLGRLRDTVN
Ga0209240_1000001149	F011961	N/A	MIRPTSQERRRKIRSKVPRMIRVRPSEPTSEEFDEILPTINASRNSVYFVPQNGIFAPNMRVFVTYPYASDPGSINQEFLGKVTRVDKLPGDKQGVAVELLMPIYVGTKETIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209240_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences