NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209238_1024280

Scaffold Ga0209238_1024280


Overview

Basic Information
Taxon OID3300026301 Open in IMG/M
Scaffold IDGa0209238_1024280 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2292
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001686Metagenome / Metatranscriptome652Y
F002873Metagenome / Metatranscriptome524Y

Sequences

Protein IDFamilyRBSSequence
Ga0209238_10242802F001686AGGCGGMSEFTTWMQSNWCALGSLLLQIALRASQEHVAALLKLSVTGAITERHSASTVAERSFANASPYWLTPTEIPPVGLPELLESGPSRWAVARHSLVVWLQTPMSSGDAAPWRRAIKWLQSPAGS
Ga0209238_10242803F002873AGGMYKRIVVLGIMGLTFVLGANYLLVYTLNQQVVREGNQQDNVYWKTFNAIEQFGEHPATGTEHKAKAALDEARQRGLSKNRARILQNYFEDLERCYQGERESCKKANSDMKEAIRAPKVSQ

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