Scaffold Ga0209238_1002226

Overview

Basic Information

• Taxon OID: 3300026301
• Scaffold ID: Ga0209238_1002226
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7644
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007745	Metagenome	345	Y
F008234	Metagenome	336	Y
F018154	Metagenome	236	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209238_10022261	F008234	N/A	LSPSTFFSVPLGSFTSLLLILSMIALGASSFHPGAWWSKLAVYFSLCSMTELYLSFLLMYHGALTMLLGAYGVLPPYSGTSLLPANVVGLDLNSHPNPLVTASFSLPFYLGFLSLGLITTSLIVNNIVGRREKRDQRGVAAIFTTDSE
Ga0209238_10022266	F007745	AGGAGG	MSRSDRLEAKDPFLADYKQDLQDVVKGMKKFGPSGLQLLVQEMIRSRWIKDRRATYTYEVAWVFDQKEEAISKILKKLEEDGNIEPAGLGRGKKGPVKPYKPRTLRLPKQTIQKPSRPTKKPV
Ga0209238_10022267	F018154	N/A	MVVEAEIAKLRKFQEFLRTEDKLVFQDLLNQCKLYAPYASTMASTIKEVPLFISMLFGQHKKIIELEKKILMLETLATKTETTIPERGVQETVEKVEANIVQTNRSPC