NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209238_1001292

Scaffold Ga0209238_1001292


Overview

Basic Information
Taxon OID3300026301 Open in IMG/M
Scaffold IDGa0209238_1001292 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9664
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038612Metagenome165N
F072144Metagenome121N
F078522Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209238_100129210F072144N/ALAGNLRGRLSMKLNFLEEIGGVKTARREAESLLLATALLKNDEIVVKDEDRMLKLAKKNKVLLRAANLIHLPSNVVDEAKKDAAEAFDLYDQMSHIFTQHGVSFVAIKSFDSLPDIGHDIDLLIPSPTELAETEKLLINQYKVQPQGLTHCDRLLGKFSCFLQGYKHDFELYPTISQLGETHLDPSQVLLHRRRETVEGHEVWMTSDSDRVLIRVIHAMFRHNFLKLSDILDFLKLIETASPEEVLKKIDNALIGDAFIFYLASIERFLKACQVENRRFQELKELAQERFGDDRLRFLRRDRLVLPYRIPTAAIIILFLVKAARDAARARWKSSIFCLVAPPLIVLDFISAAFRAGGRGGVW
Ga0209238_10012926F078522N/AMTLSGREGAMELLKRIREFIGEVSRDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP
Ga0209238_10012929F038612AGGCGGVKKILLTLSGTHGSGKSTNAGKCYYLLNRSGYKFSYIRHQDLLDPFGFIVRRTARILHLEPNRLEKMKPTRVAWSLYLLFIYCPILVGGIRLRYLFGYSVVSDRYLYDVMVGFRDNGMTVPSERLLMRLLPLPDISFVLDAPEQRILADRPEHSGDFIRKEKILYRQVADHFNLSRISTSDPPSIVWSNMLSVIKVALGERASVELITLHQVIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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