Scaffold Ga0209027

Basic Information
Taxon OID	3300026300 Open in IMG/M
Scaffold ID	Ga0209027_1009289 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209027_1009289 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3710
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3710

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209027_10092892	F004186	AGGTGG	VQLRRAVLLVAAAVLVAGCGIPTPAAAPSAKEVLAKPQQSNLTDAHFAVTGKITNNGVTVELVGDGALVYKPKPAGRFKFTTTVGGQTLTIEEVSLDGTNYGLTPASNKWVATKSASGIDPNAFSGASDQKYIGEETLAQGKVWHASAKDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLTFDKYNTGEVIKAPPADQIQTG
Ga0209027_10092893	F004003	GGA	LGPPSPQDILAKPVHTSSLKDGHFLVTGKFTNNGSTVGLNGDGALLYKSPGAGRFKFQTTVAGQQVSFEDISVNGTDYTLTVPGNGKWIAKASTSGLGPNSFTGVSAFKYVGEESLPTGKAWHASASDKDGNPFDAWIRESDGYPLKYVITQQGNSLTLTFDKYNTGVAIAPPPASQVVK
Ga0209027_10092894	F004349	AGGA	VKTKPRATLAVAVLLLAACGPTAAKPPTASEILNKPDQANVKDAHFTLVAHIVSAGVAFDATGDGVIVVKPAQASKFTMTTTVAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLTQGKAWHVKAKDASGSPFEAWVRQRDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPPSDVQS
Ga0209027_10092895	F006952	GGAG	VIGPLGTANHEIREAERRDKERRRARLTEPRRLTDRLLGQLEELNLDGVPIVPGSYDPGLAEIRSHLVGWPGIGARLLQRLHSGTRTAELIETVFTIQEVIAPSVLPAGAVIFEEPDLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209027_1009289

Overview

Ecosystem & Geography

Associated Families

Sequences