Scaffold Ga0209027_1008417

Overview

Basic Information

• Taxon OID: 3300026300
• Scaffold ID: Ga0209027_1008417
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3888
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051850	Metagenome / Metatranscriptome	143	Y
F082473	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209027_10084171	F051850	GGAGG	VVLTLLESQWKTGFASLAIHSAMIAGVVYATLDAAPRDDKVRMDTRVVLLAPQEQQNAADPPPVQLADALPGFQP
Ga0209027_10084172	F082473	GGA	MTRAVLTLSLVAGLVTRAAAQWLGVPVWNSPEGGGLTVSADYAKPNSDYGSGSTWGVRLSWGLGIASFTAGAASWLPGGGGESLTSIGGNAAFRIIGGTLPPIASSGIRANVQLGLAHTEVANVVVSPVSGTAVTGALGFGVRLRAQYFSAEPYFSPGIRYRSVSGGGNSTEFGYAIGANVGFGLFGVHLAYDNEQLKGGGNVAVFGVGAHVAP