Scaffold Ga0209027_1006801

Overview

Basic Information

• Taxon OID: 3300026300
• Scaffold ID: Ga0209027_1006801
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4295
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006340	Metagenome / Metatranscriptome	375	Y
F007853	Metagenome	343	Y
F015711	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209027_10068012	F006340	GAG	MRAPNLPGIGGTSTSRYVALVAVLTALFTAYGYLSSIELRTVTRSLDLFFLLPAFFAILVSLTGKKWAGTILGTVIGLIFLGTPSAGSNFSPHITASVIVSGLVFDLYLQRSGGSLLDPSRKHLVLAGTLGNLAMAPTGLLVLQAVGVPSLAVIWTIALIGDTLVGAAGAFFGTIIVERVKGLQARRVLEAKSAVRVRV
Ga0209027_10068013	F015711	AGTAGG	LVIIVLLSAWIAVAHFHLALLQGYITSIITPNGSVLRVTLIAAFGGFILSIPILRSLSPKDRTSNVKVEPIPQYRNPRVHPLFMTSRPARDTNFVIRKTKNRGRISRNHAGERLPPSDQT
Ga0209027_10068015	F007853	AGG	LESKLESALDDAWSKVNIALDETSKSSADLAMGIWFAAEALEYSSLLFNLTYGLEDVKPTIKPRKGEAALVLVKDSMELLKRAREGRKRSAADAYVNLRTAADFLKSAHLAQVRKSTKKR