Scaffold Ga0209027_1004280

Overview

Basic Information

• Taxon OID: 3300026300
• Scaffold ID: Ga0209027_1004280
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5367
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008272	Metagenome / Metatranscriptome	336	Y
F026108	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209027_10042801	F026108	N/A	YKRYQAQKDNPDLAQLLDQARVTPGGDRVTLRMSLSDAQMTSLIRKNTFALKM
Ga0209027_10042802	F008272	N/A	VVTEARSLHLQIDADARLAAAAGGVVRYLADEAGLENEAIARLQSAVIAVCSEAFEHLTADHPQLEIAFTRFSDRIEVALPHLGDDPPAVGLDAIAGFAAHGRGSIQVVFAGFDRVQYETRRGAGVTRLTKYIGQASGKI