Scaffold Ga0209027

Basic Information
Taxon OID	3300026300 Open in IMG/M
Scaffold ID	Ga0209027_1000693 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209027_1000693 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12305
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12305

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F005666	Metagenome / Metatranscriptome	393	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209027_100069310	F005666	GGAG	MKVLSLRILLPIAALLVAFGPNPARAQAPLEPAQMSPRTAFYLIWHGVPSPDVRKANSLLALWDDPDFALVSSAMASNLMGSSAEKSPKEKLIAREIQQYTSLLENSFTIGYVSEPARRAASNAGGSLDLKPAWNGMFLVYDRTGKEVLLSKAVLRLRTEEKEAPRLSQVTIGGAQVLKAEGKSGISYWAEHGKYAVSTGERSVMEEILGRLDGKLSGAASLTQSAAYQEAQANLGSGLIEFFLRIPDLENLAADSKTGSFQVRPLLDAAGVAALHSVSGHVSFEGAKTHVQAALLGDAATGTPFDIWAAGQSSLASLSFVPVDAVSYTSAQLNFLGIYDTVKRVARAAFPQAQQGNADLLDTIAQHKLGMPAVEALGLLTGEFASMQTSASMDSTKQVYFLGIRKRPETLKLVRTVFSDQITSERNEDGVTFLKISLGGKPGSAQWNSFNLAVAPDMILGANRVETLREVLAHRAHASAVEGLATAPQFQAGRAKFPEHLNGLSYFDFQKVDWQALKDRWIEEAKKSPVARTMNSSQNVVPSAVPDWLAQCNPHVFSRHLHYSVSVSWRDSKGIHWDQWVE
Ga0209027_10006933	F000092	GAG	VKQHLGRQSGVQTVEVSLLDGKVDVTPKEDGQIDPAQLLKATYDSGVTAAEMDMTARGKIVRDSSGSLALQVEPNRSFVLTPNELSKGLEALADAQTMVTVRGQLYKKTAGKKKEHPSASLKLLILEVQKKE
Ga0209027_10006934	F004042	AGGAG	MNRKKLALVAVLVSIVSPVSQAQIKHIEMRVEGMT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209027_1000693

Overview

Ecosystem & Geography

Associated Families

Sequences