Scaffold Ga0209236_1046514

Overview

Basic Information

• Taxon OID: 3300026298
• Scaffold ID: Ga0209236_1046514
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2195
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004205	Metagenome / Metatranscriptome	448	Y
F006201	Metagenome / Metatranscriptome	379	Y
F052533	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10465142	F006201	AGGAGG	MRPEQKTLLTSALEALGPERVTRGLEATGHTWNDCFLAIALYGAPAALARQLQKRWRREHFVGTLLGVRMQVVNEVVRAWDHEEGTFRALAAEWLELNRSRVPTGPVVSA
Ga0209236_10465143	F004205	GGAGG	MEARVTSQSQPFRLMERMDEAKVFHGQEVRADLPNVRVTALAGSAEGQALFCNLGPIRVREIVHRGDDGPLPTNVTLEGLEVSISGTYDILNALVSANGDLRLVVDDKARVVPAARLVDAALGYRVAMGG
Ga0209236_10465144	F052533	GGAGG	MSEIKSKAEAHEWILTHVRQRPGCQDFSQQFRLLGKGPKWECIPTNCYDWDRASLEAFDQVVGEARRRFELEG