Scaffold Ga0209236_1012523

Overview

Basic Information

• Taxon OID: 3300026298
• Scaffold ID: Ga0209236_1012523
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4935
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016387	Metagenome / Metatranscriptome	247	N
F022177	Metagenome / Metatranscriptome	215	Y
F029395	Metagenome	188	Y
F049864	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10125234	F016387	GAGG	MTLAPTRTMLELKSTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILSDEEARELGREAGTNTLPEMVLFWFKKFNMENALKAMEMIGSYGNAFRLQYTLDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPMGAKVETRETDGQVVATIIRPLTGLASEHKDALLIPSFAGAKNGRGYKR
Ga0209236_10125236	F029395	N/A	MDAVLSGNGKREGLVYSEVREAKTDGRLKDLLVGLIDSSKALDVRVWLDGVYTDIGDEQVRGEWMNDRDVYFKVEGRVDKRNGS
Ga0209236_10125237	F022177	GGCGG	LMKDTRDAAIESYKWTAFLKLKGQTSLRNEEEILDEFDGFVRSLQRVGVDYNIIVMVEGRAPRQLHSAYNARATEAKIARERPGA
Ga0209236_10125238	F049864	N/A	MAKFILSVGDGTFEILASEAKRRDVTVQQLLRAVIVPEWVRENAEVNAPSMAPREIAPHLMRQSIYPSQRDQMLQTPVNRLRP