Scaffold Ga0209236_1010095

Overview

Basic Information

• Taxon OID: 3300026298
• Scaffold ID: Ga0209236_1010095
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5568
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065617	Metagenome / Metatranscriptome	127	N
F098990	Metagenome	103	Y
F100842	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10100951	F065617	GGAGG	MVTSILWALTIGMTFILTPQVEASQGPGAAKMDAKLGVEVEGPFEMTCTFLGRSKKVIIVYRHGPREWEPKLSCNDGAGSQIARHVPADGRDPRLMITGWYADGREWKQCELKGWRNDPKGKSLSCQTPSGGTMTVTCTKGQCAKP
Ga0209236_10100952	F100842	GGAGG	MTRIAISVLFLLCVACGQASQTKAKTIVPGAGPRGVDMNTDIAVVVNPPVDFKCSFQGGGKKAFVIYRLVSDQWKPMMSCNNGSASDVLGHLVAEDPDPRRLITGWYEIGQGWQQCDIRGWKSDGNPPYLSCRTPDGWSSTFACTKGRCASP
Ga0209236_10100958	F098990	AGGAG	MTGKITRKSMLGASCVWILIGAAVLLWSPMAEAQGTFSQAPQVRATQPAKIDRSLPGSRRGILTKAQGTTVWIDRASYVLAPDALVENKAGSPLELRQYQGDSVAFEVQYWLGTGSADRQITHMIITFPE