Scaffold Ga0209236_1008280

Overview

Basic Information

• Taxon OID: 3300026298
• Scaffold ID: Ga0209236_1008280
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6211
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013282	Metagenome / Metatranscriptome	272	N
F024764	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10082803	F024764	N/A	MTPEKTARLGTKTIRYAVILVLLTAIAGSATYAVMSDTSIQGLTVRFYNVSRYCSNSTPAVLTFNFSQVVVYSTASLETSLTHVHFTMSADGVLFGTVNAQDSKFGPGQSVSYSLIFSNATLDPHSQPLKSNIFLGITAVVSAGLYASTITASDSGLVAFSGPPC
Ga0209236_10082807	F013282	AGGAG	MTDKLAGKYDSQRLLGYVESVAKESRKALTLEFNEKHKGIPFNKTGHILRDSLIAWFGRRDKNLKIIAESVNSAKLGEVRAVFGGETKNVRFRVRADATFSLAGGSADSPCYLKELNVSIDRHTS