Scaffold Ga0209236_1007192

Overview

Basic Information

• Taxon OID: 3300026298
• Scaffold ID: Ga0209236_1007192
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6706
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003305	Metagenome / Metatranscriptome	494	Y
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F019106	Metagenome	231	N
F035244	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10071921	F003305	AGG	MQDLATWEEPRELDTDNEAVISLYDGIKKILEKQPKAKTKPGSGIPREARHILRCGRILKVDIERKLVIITVMKTDGELHQLRIEANQD
Ga0209236_10071924	F035244	N/A	MSKPGAVNFPRINLISILAGALALASVFLPWWGIDASGFGSVVSPRWTLWNGPSTDSIFRGSTQPYPTLTSASPIIGALVVISALLALAGSFTWNIRPLIGSFILGVLTSIAYLGVVSYAVTNSCNGQSNCLSGPFGSETVFGITLNWGFQIGFYLYLFAGALTLVGLGFHRIFHKTTPIRETAQASLAAS
Ga0209236_10071925	F015579	GGA	LGSDSKKPPRPRHLFSFSGQSKQPETSSTPRAAGVTRDDILNSLTKHAHPEQGHVEEASETEESTQFQDSNQTAVPVRTRNRGSARGALVVFLGGFLAVWLYGYVTGAYEIPYLRGVTESPEVQVGVQLVSSNPVLFGAVSASFLLGALYLRHRKKN
Ga0209236_10071926	F019106	N/A	MASQVPLLTLARLLVLIGGVVLLIGGILQAIDIGGLTDFSTNLARLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLIAHYVKI
Ga0209236_10071927	F012334	N/A	MSSKRPVELGREARLFLLFLSEVNLVMGALFFVYPSLVISLWPWPVKVLAVRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVSIVLAASQAGGYVISAWTGYFLAASLGNFYLLNRYGWPRKPQDRLGASQPWKSARWFFRIQTIIVGVFGIMMLLLPGVAQAQFWPWLVAIPTLQLFAGLFLATCLATGWASVQTDIGRIRALLPLDVIFPSLALLAVGIHWDVISSQSPSALVTGVWVFIYAFVAVGSAYLYFYSRKMTVM