Scaffold Ga0209236

Basic Information
Taxon OID	3300026298 Open in IMG/M
Scaffold ID	Ga0209236_1003905 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209236_1003905 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9109
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9109

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010022	Metagenome	309	Y
F014723	Metagenome	260	N
F023077	Metagenome	211	N
F041118	Metagenome	160	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10039055	F010022	GGA	MLALALLFGVSYPPAFLFVVLFGIPISILNTILGLITRTPPGLEFQPESAKIRLIIDRGVVRASIYQLVFLNSKLILKRLTSVMVTVILALVLAVVGFEVLGIIGALMGGVTGFSLQEFLTQRMRNKIGTEMQLTSLGKNDIEIEYNDLLEVRLVKSRLHLISENGSLTANFPGGYAIKIKPMLADLFETKFTTEESLRAAEAAEKENEKRQHPGSDRGKFSRR
Ga0209236_10039056	F014723	AGGA	MSEQYHRLFLRWEILRGWIPAIIFAAICVGLELLFFYDALNTGFVDKTVSIPIGSWNLPISIALSLALGNALVVVTLWMNVFESTAYVKAGPDKQVRRILYPLRMIRTAALVLAPFTIILFAPYIVEANWFVNAVASVQAFKPTAESFYNWAFNVSQIDGATRFIISQMVAALGALTIGGLQLWRVKGTKNLVRAFRRRK
Ga0209236_10039057	F023077	GAGG	LKKLTGALAVLMMAAIALLPLPAHTATMNPQENLNLYAGNKLIVDSTQPSIKSVVVRGNLTAAMVSNNAYPAKNFTITTNSTQLYTLNFLLSYQSPYTTEITIKDPSSGSSTQYTSYFVSGGDLNLTVFASFQTAPSNGPNTPLGWASFYGWVSQFGGAFPFWIKILYAVLGAQFVFVGYRWIKFEDERRRIEGHLPPLDRGNKAYLWTEVVFRTLLAGFAISLAVMIGEVLVLLIAQYLFFVNLDLVSLIDFFSIFFVAALGTLVYLTREGLDRIFDLKPIMED
Ga0209236_10039059	F041118	AGGAG	MTRLSFELVDPNTGEGASAEAVVDPKLVEDLNFYRTQGATGKAFLIWIDTVKGEVSWQLRTIPVFGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209236_1003905

Overview

Ecosystem & Geography

Associated Families

Sequences