Scaffold Ga0209236

Basic Information
Taxon OID	3300026298 Open in IMG/M
Scaffold ID	Ga0209236_1002223 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209236_1002223 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11856
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11856

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004922	Metagenome / Metatranscriptome	418	Y
F012563	Metagenome	279	Y
F016134	Metagenome	249	Y
F018901	Metagenome	232	Y
F039072	Metagenome	164	N
F053955	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_100222310	F012563	AGG	MENSETFLGGFAGGFLARGLTHIGYGIYFTTSRLIGIDLGANGGGALGGTLAGFIHGELMPLLSPEESAKTITDLERMKEFEIEKDQISRIELKKPGLLGTGHIVITPKEGKPEKITLRHRIAYDRLITLTKVFSPEVVRSS
Ga0209236_100222311	F039072	GGAGG	MTLLGAAAILGGIILTKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKETPRGIVADNWPAIRPRR
Ga0209236_100222313	F016134	GAG	LHDRASEATQFLKSKVEGKMRTKGTQLQIEGAKTKEVKLLLHKFLHHQGLNHYRVLSQSGVLEVTPPEKHVLHPPEREGSPPTATQTTPYLFPQTPALTPKKKKTKPKHKHE
Ga0209236_100222314	F018901	N/A	MLKTKIIAFLGLALTLSSLVLGSRTLGYQRAVLSLQLGGLFLVLGGFFRLFDSHPLENALAGLYDLEALTS
Ga0209236_10022238	F004922	GGAGG	MCVTAVVKCWHCGEWFAKQANRGEFENCPFCGKGFEQLGVEAQRAVKATLAPFLEVPQLKERPLTA
Ga0209236_10022239	F053955	GGGGG	METRNRLGRTRVTTIELALTSTLAAVYIVSAFFALTPFIGGPGFITLEIVMLPIIAFLLRPVLATAAALVGSFGSAFIQTSFFHVFGLPGLLIPLLAVALGSIAFHYEWGPIAPWAYVLAGAVYYIIFSKGGTLFWLAPYTLVIISLPAALRAKDPYRTGLLALYTAMSEQVSLNVFSISLLNLTGDFWIGVTPLMFLERTVATLGAFAAIVALKSQLWTRLELGHVLREVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209236_1002223

Overview

Ecosystem & Geography

Associated Families

Sequences