Scaffold Ga0209236

Basic Information
Taxon OID	3300026298 Open in IMG/M
Scaffold ID	Ga0209236_1001489 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209236_1001489 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14097
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14097

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013998	Metagenome / Metatranscriptome	266	N
F014491	Metagenome / Metatranscriptome	262	N
F016384	Metagenome / Metatranscriptome	247	N
F019978	Metagenome	226	N
F055614	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10014892	F055614	N/A	MVQGADSSRRQSPSADKGNTRLTIDARTLSKAWCLAVSSEDDASFEDRFSDQARKKAREMFERQPEPAAEEFDFGELFTRILLEKDWTDKLESAVVKIRNLFRIRNTDTKLSKELKALIPDMREVAEVYDEMTTGYKEFIQTVLDAKQSPFHQTRLKIESGESAKLPKHSVRHK
Ga0209236_10014893	F019978	AGG	MSEKKRVPPWERAQLSFTLAERRRLRKVEENERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIRSDQLAKEEQKIGEEQGFCKCAKNNPRTDPEKLA
Ga0209236_10014894	F013998	N/A	MRLKMPLKMHRLLSLLAFVLALIGGVLVVVSALGGLSRLSIGSLAINGLVFLFGLGAILGGWMIYTGIRKLGGIMTLIAGIILFVLMGGAGTSVLLVLAAGVLGLLAAELKPWWAFWR
Ga0209236_10014895	F014491	N/A	MFLLVLASLAMFGTIAYTITLQDITNYAITYITGLLISVTGILLGLSGILPVSKSLERMKLQVTLTITTLLWLVATIMIALTNGFTFTTSTPLLRYQFLTGVGLFTILVVFYSTSTIEATRQRLIAAQAAKAGQPGNTTG
Ga0209236_10014899	F016384	AGG	MSLTRNLDFCQSGDGSKAWSEVLGLREDFKSHLAWVMGLGHLSETFARHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKEASFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVSAASTTYTTRDVPELLRLTSAVKRFRELLSKTMSQWSSKLEKKDSTPPSKGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209236_1001489

Overview

Ecosystem & Geography

Associated Families

Sequences