Scaffold Ga0209236_1001453

Overview

Basic Information

• Taxon OID: 3300026298
• Scaffold ID: Ga0209236_1001453
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14223
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10014534	F001571	GAG	VSGSIPEKRLALIHRVIVPDKEYPKEYALLVTDSRSIFIRLEKTRSSYWLRGEMKFGTALVTDVIPKTLEDYERIGLESLTGDKTNLTVPHEDVTSLALKKEEPQFRAREFFVWLTMRRQGHRFQVYHFEMNCLQSSNSETVIKFYMVPLGAYFKPRRQTQTREMILQEYATVALEIFQKVLPARIISS
Ga0209236_10014536	F017116	GGA	MASDPIIAMFETFNLVLILIAFAIFTRLAFKGKSLGSFRFQLSIFLLIWVISEIPHIAESIGFLAATNYEDTGLYLHAASMTVFAIFVGWRSLRFLTIHQPTPTSTVSIPTDAPKVLKS
Ga0209236_10014537	F011479	AGG	MSAVSFEDLVSQSVSETMSKILGSTTWKSVNFFFDTKTAASEPEAFAALLDKVFGFTAKVLQKKIAETLLNKVGAVQPSSTLDFRQILRLAKAKFPRAPVPGQLGS