Scaffold Ga0209236

Basic Information
Taxon OID	3300026298 Open in IMG/M
Scaffold ID	Ga0209236_1000479 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209236_1000479 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23119
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (40.74%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

23119

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (40.74%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F002499	Metagenome / Metatranscriptome	553	N
F008901	Metagenome	326	Y
F025571	Metagenome / Metatranscriptome	201	Y
F038622	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_100047912	F002499	N/A	MPGFQLAVDYWFDRVLQGMGGPIRDWIYDFLNKKGISREDIPGRFEDVVKTLMERLGTSARVIAYRTVVELYKEFALPPNFDYDDSLPDRFVYLKERVVSDRLHPTTPSLRFPT
Ga0209236_100047914	F008901	N/A	MNRCFTTVVEVILGRTVREEIFQLLERNGIKPVEISVRFDDVIEVLTRVFGNSTRVFVHMTVTELYKEYSLGAAGFAFGESLKDQIALLREKVVSDLLKPRHYTSIDP
Ga0209236_100047923	F038622	GGAG	LHGPTIVSWPSLVRRAAGLRLPFWLWAVIIGFVPTRLLATLDYLIVPPAGLGGYFLDTALVLSLFLVYFVYAIHFISKRMERLANYVTQMNPDQPVNALRIPFRLANVFAVWVVLLLAITLLFGLPSPAAIFSEHITVIAYFFFILASFLWIYGYSMYAIHRAGKLPLRLKPFTEDRTLGLRPFGSASLRLASIYAVFPVTWTFVELVSIDVEIPGGLAITFAPIRLTDIIFSVGLILVGIVLFFLPLLSIRKRLLDAKRQELSWVTPRYTTVIAKLKEQVPKTAQEDKANQTQALADELTIVRQIQQDIQRIQSWPFDVGVVSRLATILVVPPILGVLARVLILVFLHL
Ga0209236_10004796	F025571	GGAG	LAGHHPVGHGQSAPTTPGGWIDYWTGYYNKSAQLKRASQESWNATREIWKRKLVQARRIRCQKCIEIVKLWLRTYGYGPGRRVLEENLSQRGKTRRTTF
Ga0209236_10004797	F000611	N/A	MNFPTYVFATVNPGRSTNVVEELKRNSQIDMIAPVTGRYDLVLRLKPNTPHNVYQTVKEIRNISDVVTTDTHTGFDGIQPTKKFENQMALGVSLLTCEHTTSENVIKQLSSIPGFVEASTVPGQFDIVALWQARTSEDIVKTSVERVSNLPGIFKSETLLAYAPFFKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209236_1000479

Overview

Ecosystem & Geography

Associated Families

Sequences