NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1000136

Scaffold Ga0209236_1000136


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1000136 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38219
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (63.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012762Metagenome277Y
F016379Metagenome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0209236_100013626F016379N/AMPGYREGFVRLLYGIILAQFMVIAILLGGFSSEYLSNVYFRIWVDNNFPQLSMLLTGQVDALLIGVALGGTILLIQRMKNEARMAGETASTFGRPSSLTQNSELLPNHATPTTIVEATWETPEQVLGELEKHDF
Ga0209236_10001367F012762GGAVILTAVAVRRLPTVLEDDPSLGTITSFPTLLHARASFSFDINPESLQKALVSALASFRANPKAMEITLADRDGYLDGQLVFRLGIGNGDSFDTLDSKEEERVLNRIENRGPFNTLDLAFQLHYAIDDGRRHRVHEDHYVLRLVFQPGRVEVLVHHLKGVRRVEPDELVRLIVEELNVELTRNRYGEIELEAVDIT

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