Scaffold Ga0209236

Basic Information
Taxon OID	3300026298 Open in IMG/M
Scaffold ID	Ga0209236_1000011 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209236_1000011 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	73756
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (75.58%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

73756

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (75.58%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008999	Metagenome	324	Y
F018901	Metagenome	232	Y
F041660	Metagenome	159	Y
F066619	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_100001111	F018901	N/A	MLRTRIIAFLGLALTLFSLLLGSRTLGYSRAVLSLQLGGLFLVVGGFFRLFDHPGMHEVLAGLYDLEAAMN
Ga0209236_100001124	F066619	GAG	VPNVAPTPRPPAIRQGPDFNPTIAKGDYVDYEVELDAGNDFSGEVTASGLVNIYLLDEDNLDNLDQGEEFWSETGEEGVENAKLEYTPPSKGKWFFVVENADDRVLSATVKIQKGTASTGPA
Ga0209236_100001171	F041660	AGG	MMVSHDTKRILGISSLVLVLLLLLARSLPFPFPGSQQSAIPRNPRGPSGYAPTLIFSVNASFTKAPTFTLTLTQSHSYMWSFNVTTGSVKVDLTDPQTSSIFWTVGPRSVGQWHLNVTSFASFNWTAPASTDYSMVLENQNLWSWSTSLSSSTSPLSTCDIHVWDLNIPGPPRIIVQ
Ga0209236_100001184	F008999	N/A	LTEYSVHTTRVARKFEWFGMTVVKRYLTKDKDSRDLRDVHSNPEFYDKGIDLILNLPNAQKKTIDLKVDSYIGSDPSRKIRGLCNPDSGFILLETISQLQYDRSRKVSSSGTLPVRQKADVPGWFFTSSADEVYYYFLALLNTETQLNPLYAEYVELVKGNQPTDEVENRLLRELRVDRDLLVSFSLSEARAWYDAAPETVFHGYAPAPNPGYLTLSKRVKRELFISNGIGKSHGSIFSLVKPRSASI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209236_1000011

Overview

Ecosystem & Geography

Associated Families

Sequences