Scaffold Ga0209237_1273317

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1273317
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 518
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006969	Metagenome	361	Y
F104063	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_12733171	F006969	N/A	RYQDPPDGASSRDRLSDETGEWEVIGRPYTTAGGKNARVRVQRVGQPGVSEIRIWVAHERISVKRA
Ga0209237_12733172	F104063	N/A	MSRVAVAAGIVGLLLFVEPPLDGLAGYLLFQEGHRIVGTIVFSVNVVIAAGVLFSFLPEWFHPPGLMLVAAIAHYNVNVWLGLVALVYAVAVRAWPPALVLIVGAV