Scaffold Ga0209237_1016353

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1016353
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4323
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F004048	Metagenome	455	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_10163535	F004048	N/A	MPYWYRQIVWGRLDPYRSIGWIISKPTSLSNETVAVPGTLPEAELMLPEYMKGKLSLDEWKILITLHMVRLKSYNKGRISKLLGKIALAPRGLFFLLLFYIPAAASGGLSGPVLYFPSPIFLLAALWIRRSLRKSLKRQEFELDRKVAEQLGTQQVSQGLEKIWNLDQRQMRTNFRYSFLAGWMAYWNPSIKQRIEELSKPRPVDLLRPSRIPRIGLRGRVITVLVGFAIFWGSGLVAGNIYARGQTMVVCMDTTCSALVVIAAVGFWMAILGGISIIVWILRRFL
Ga0209237_10163536	F002498	N/A	MNAYIFGNTDCQCARVKAQEMIYSLNKGVESLSKEEHGLFFDAMQRLGLPNEVKQAAVALYLDFKSRPIGEYNAEHKNLEIFLIASVSLAAKAMGDLRTDHEFESKMFVSKEKLLDAEERIIKSFGLQDSIMHFSDLVLQLTRRQIESMAESFAQRELVSSDEEAELVRRSYNYLDEAVEKRLSPKMSYRGRAAGVILKAVRDLGLQISEMDIARAAGYDKRSMATNTKVIDELLKDSKT