NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1009847

Scaffold Ga0209237_1009847


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1009847 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5721
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004152Metagenome450Y
F054745Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_10098472F004152GGALTKIVADDLQNDEVSSLVEYMKAVSSGQIAQHKKLVKVTGLSNKKIKFLVKKFLYTRHLPGYGVLETAGNFEIVRLKPEEKRTEQHETLSPTMLPESIGLGGLPRWGKPSDMIEWEGQPPPMKKERYKKQ
Ga0209237_10098477F054745GAGMADFYFPLEPRPLIVFVDGPVHLKTAQMMKDEELRSLLRKRGYRILELSYGTYSDKKRDELYREILNGLGR

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