NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1007998

Scaffold Ga0209237_1007998


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1007998 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6340
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014275Metagenome / Metatranscriptome264Y
F016870Metagenome / Metatranscriptome244N
F020983Metagenome221N
F039878Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_10079982F020983GGAMRWDESPRFLLIACVASAVFSAALALAAIWDHPGYNVAAAVLALLTALLAYRAFERSTHRRLGRIQREHLVLRLRQLPAPIELRVVAVPDDEAVRFAQELLDVFVEAGWPAQGVYRALPANIASTGLFVAVQDGNFPSEEERRLLLALSEFGMYAVKSTSPKLTHPRALELLVGHRPTM
Ga0209237_10079986F014275AGGAGGMHKLVVRLDRAGAGKHVSRWKRQMDQSIRRAVKASRRAIHATNHSASPHKAERMALKTKKAVVKAAMGL
Ga0209237_10079988F039878GGAVKLGRNWALTVVVLTTLTLPGCAPLPKVEYWGGFFRHLHPPQYMFQVPDGWRPVTTSDYPLLGFNRRLFQTLDEAGRTAAMQRAELEMQSGDAGLISSRGAWIQVRSQSGPGGWYTFKDLRFGLSDREKQAIWQCLAASLIQAAPPAEKPNLTLESLDVVEDYDVRNVLRLRFTADVPRGSMHWTILEFYGSSGVVTVAYVGIPEDREEGLAGLEVLARTFRFF
Ga0209237_10079989F016870AGGAGMYDRTIDRMSDGASEFLVQFYLSSPKLSITVLLAVWLVLFFFALWYFVLLPATSNNLVNGSFEARLVGWGTGWLEDFPAYRGASRLNQYLAPRNSQTGQLAVADWRSDPTEHRPGGRFSLLVEHRSDKQSEVYSTLSQRIRVTPRTGYNVRFWAKVDRMEHDGDLWLSPNGSSVAWDDPKIEVSGAGKGWQFYKLDFNSGDRVDLDIRFVAEGPLKVWVDDVVVSRVPAGETWVEKARGWVGSLWAILR
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