Scaffold Ga0209237_1007259

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1007259
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6670
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003037	Metagenome / Metatranscriptome	511	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_10072593	F003037	GAG	LWVEFKCPMCGKDLDDDKTMANFLVCADSSHGLLRFFTGDGCYFTTNEHVAEELMKKGKRVHVVDPKEFFGNQTINLE
Ga0209237_10072595	F007915	GAG	MSVAEVARPALPSSTIRSYAMIGIVLYAFGLVLNEIGNGLTQLWLVPYADTISALGFVIALYTASLAGLGTRLTVLIGLIYGIGIFYVSEPDPTYVASGLKLGSYTHYIGLGLIGFSIILLISLAFYLTRAKSVHRALPKQDPGSTS
Ga0209237_10072596	F005700	AGAAG	LGREVFSNGALTYRTEYTLGFLALLPLLATGVAKGTGWLVTIIVVYVGIPLLIWSLVVDRLASLVLRIICRIRESSGHQYYFERQVGKPGVSRRLLRDIRVLVFVFFLSALIVPQVTQVNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGSLDRAISLGFTLVISLLPSCILAPTLFYRRLEPGIIAKIRQSRAAMTMARLFPQTSGPSLPSSSAPTLRSVRVNEETKQTAEPHS