Scaffold Ga0209237_1006558

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1006558
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7019
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008019	Metagenome	340	Y
F012566	Metagenome / Metatranscriptome	279	Y
F031444	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_10065582	F008019	GGA	LGVRKKIAISIVLIIIVALAVWQFTSPQLLPMVGSKYSVFGPYSNRGSWTIMEMMRYGNVYLAISISNVTFPRTGIGTDYSLVISDVNQTITNSIVKGFGVRVTGMNIQDSVDGSTSTWGNGNAVSDAAQATGIFFFKTSTNHMLRFTVAFQLYDLLPLGSIPDQTVTRSFNITQTVL
Ga0209237_10065585	F012566	AGCAGG	MFEDAVESLGNIGRNIGRNTEIENFSTQGDPDDNRICKQILESDPAIRVAAFIEGAEVTGYAETARTKNVLSQSGDLRKKIGFWVSIITEMARQTDNLFGSTESICVTHKGLKMVTVPLSARRSLGLSLDRSADSEKIILKITAKFSLGPTV
Ga0209237_10065586	F031444	GGA	LDLKTDFASVFQSSVKDGLRNTLGETVMLTIVPLLKQTLQTYAEKPGDFHRELQFYFGFGALTLERMIVKELFQRLNLHYPSGNELDFETSIGLARNDLSSFQRGAARK