Scaffold Ga0209237_1001127

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1001127
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15743
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F002499	Metagenome / Metatranscriptome	553	N
F008901	Metagenome	326	Y
F031050	Metagenome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_100112714	F002499	N/A	MPGFQLAVDYWFDRVLQGMGGPIRDWIYDFLSKKGISREDIPGRFEDVVKTLMERLGTSARVIAYRTVVELYKEFALPPNFDYDDSLPDRFVYLKERVVSDRLHPTTPSLRFPA
Ga0209237_100112716	F008901	AGGAGG	VRTTVTQTFQSTLNQCFDTVIEDILGRTVKEEIFQLLESNGIKTSQVSSRFDDVIEVLTRVFGTSAQVLVYKTVTELYKEYSLRTDFAFGGSLIDQVALLKEKVVGDLLKPKHYTSIDP
Ga0209237_10011275	F031050	N/A	MVAFGRQTFDLIDAEAKERGVTVQELLRAVIIPDWFRTHGELLTKITMPDAKRRIEPLTKTEPSLDQDQGSKFHSNRLYLV
Ga0209237_10011279	F000611	AGTAG	MQTNMNFPTYVFATVNPGRSTNVVEELKRNSQIDLIAPVTGRYDLVLRLKPNTPHNVYQTVKEIRNISDVVTTDTHTGFDGIQPTKKFENQMALGVSLLTCEHTTSENVIKQLSSIPGFVEASTVPGQFDIVALWQARTSEEIVKTSVERVSNLPGIFKSETLLAYAPFFKA