Scaffold Ga0209237_1000985

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1000985
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16635
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003486	Metagenome / Metatranscriptome	484	Y
F032227	Metagenome / Metatranscriptome	180	Y
F071082	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_10009851	F071082	N/A	KGVRFKVRFGQRMTEFEVVDFTPPTTFGWVERGERNGWKTFFRLDPSAQSTAVTVRDVWAPRSVIAWLRGRLFEKRRVNSQLEAILSNLRKILAP
Ga0209237_100098516	F032227	AGCAGG	VKEGRKRIIRTVVAALGLTALLALQPESARLVESAWARGEATRGPVVRKLILSDQARRYLQLQYRSYPTEFMGCMIGETRGSAVVVRRIAPADVEPNHSTATRVVPHQTCEDAGWSGTVGMIHSHPGGERCWYFFPGTQVASSDGQSFAGQSYPVDAIMCGDHVVWINRDMAEMQLKLAADTARRAAAAWER
Ga0209237_10009859	F003486	N/A	MIMADKSMEQLRSLLKSYEERAAKLQGDVKPTHDEGERRRRACGDRLRTVVRSVLDRFMDAVKNAGHDAAIEDETATAGAYPTVALSFTPRTPAGTALASTLTFKCDPRRGVAVARDIKPSPTKGRAVTSSTDRIGTMKVEAVSVEWVETKTLSFIEAVLKVN