Scaffold Ga0209237_1000495

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1000495
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22295
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027148	Metagenome	195	Y
F030724	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_100049519	F030724	GAG	VNRYPRPESQPFMGPRGKILTYLLLVIIVIIALWQFTSPRLIPSVGTKYLSSTQYANRGSWVLQEVSSYGKVFLVFSIANLTYPRTTLQTSYSVIVSKVNETALPSYVRGFTLKLTSLHIQDNYDGSTSAWAPSGSFPDAVQATTLFNFKTSANHQLKFTISYDLYEILLIGSLADHSATQSFNITQNVV
Ga0209237_10004958	F027148	GGCGG	LICNECEESQAFPKDIVELESSLGIPREELMVDMEKGKRCILCGSLLEQGAIAQPIEKDSTKLTTGEK