Scaffold Ga0209237_1000275

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1000275
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27995
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (45.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002514	Metagenome / Metatranscriptome	552	Y
F005811	Metagenome / Metatranscriptome	389	N
F042817	Metagenome	157	Y
F064577	Metagenome	128	N
F081164	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_10002751	F064577	N/A	MTSFIRLTPKNILRIILLVVFPWLPPYLFEKTDFYFHLTHQPDWYYNLSGNRLFVDMASFAVWGIVAAYLLRPRWAVIQIALNALLVWFLFYVACPIYAPGGVWQPECYYAGPDGLVGFRLAGIMFCYGALPVLVRAASKGDALDHRIRPALAVLSGVILSVVMIWYPLSAWFSGVTYLPLFLTFQTVLLIGVPQIATGILAARMGRSLKIGATSGIVSLLFMSAVFWTPECPGCDRSSLYLFAPSWGIFALAGSITELGLPSLLRL
Ga0209237_100027513	F005811	GGAGG	MIRPENRRQWVPKTAELTLSAGLAATYIITTFIPLTPFIGGPGFITLEIVMLPIIAALLRPIPAFATVFVGSLGMALGQPSFYQVFGLPGLLIPLVAVGAGSIAFHYRLGPIVPWAYVLAGAVYYIALSKGGTLFWLVPYLFVIVSLPVAFRLKSNPRIGLLTFYIAITEQVTLNILSISILSLTGPVWAVITPLMYVERTIATLGGAAGIVALKSGLGGRLDLMDQSSREVRQ
Ga0209237_100027514	F042817	AGGAG	MILDPCYSLVVNQSVTSALAAEALMAPVKRIIVDAAQALAATVAELRGPLSATIARRHRLVERSETTSLDLFASLGLQALKSAMAMGWTLESGWMMRRIWISARSSVRIRMGRTCMMLWIGMRVALGFRLGFHVDSSRKKSRPVIVYF
Ga0209237_100027516	F081164	AGGA	MRVASPLGTVGILVRYWVKGRFTKATILGLIIGEAFSVIFILFGSSTYLSFSNRVGLTTGLSEVAGSLVLALYLVGLIQSGFNGGGLPASSSDVDYVFTSPVPPREVFAAKVLLNSLTTVLFGFPPIIVLYLRFSAYYHTPMTAAILAGLVTLVFLVIGLLLAADITLSLGHGIGERKKLWRNLFIILVLVLSLLPITLLIPGIPVEIADVTRVLPNGLAAIVSVGLVSGTPGGLDYLVDLLLLFAWLGAFLVLGVRMARGHFYELLEVSTPGAEKFDHPNQTSRLDPRGKSIWAIVRLKEKILISRTREARALFINAMFLSGFLVIYALSGSFQSSPTSFLFILFIIGSFGSGTASRWIEKERLWILKSSPVSMRRYVKEVYRARVAPLLIYLIPVTIAVGVPLVLSQLSTPSLLLGVVLALPGALEIAGITMAGGMYFASRYGQSSADDILSSQAQELADIRRFLFQTIINLIMVSPIILLVLVSEAVATILGPGALPLIAVGLVSVSIVFTGLSINLLLNRAGDAVTRREDL
Ga0209237_10002757	F002514	N/A	VDESTGLPLAGREDLRDRDVMNLLDQLELYTLDSGRKEPSQKDYWLFVYKSMKSGLLMTKNMEKHLRYKLKALDIQP