Scaffold Ga0209237_1000205

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1000205
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30771
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025703	Metagenome / Metatranscriptome	200	N
F030039	Metagenome / Metatranscriptome	186	N
F051819	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_100020511	F030039	GAG	MGSLGGSAPLRAEEVVRRFYDFLARGRLVDALNLFTTDARLRDVSGHESAGIRAITSSLLTYRVPQDIAVEQMEPEDGEIRATVRSASGRSVGRFSVARGRIKSLRMERA
Ga0209237_10002052	F051819	N/A	MPSPLVNRYAIYFQLPDQGKVPQSIAREPSLLMAVENCLNAYQATGHTGFVIDDTRAHREFHVEREVLLQLLFLRHQDRTRYFEILNRLDRQGSQDELVAFLATHARI
Ga0209237_100020526	F025703	AGAAGG	MRAERLKLRAAEWLYRWNLSMSVLGIVFTILTFVGVFALVLRQYFANIGLNELVVLLVLLAITMTIIIGFGLFLDKFLRFWSAQTTVATVRNQFLTSALYQKELLIMKYSQVPQMEGLLRLVEELPDSPGKMRLVEQFRESLQKLQKTIETKEWEVAPDERTY