Scaffold Ga0209237_1000175

Overview

Basic Information

• Taxon OID: 3300026297
• Scaffold ID: Ga0209237_1000175
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33201
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (68.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002500	Metagenome / Metatranscriptome	553	Y
F002975	Metagenome / Metatranscriptome	516	Y
F077108	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_100017520	F002975	N/A	LSLIDPLLELKGLRFCEDCYPDVKREHAAASISDKMDRKNRAAFADDESDENLRGSIIKGKQALAAKENEFKWDNPSLSLIASALRILTDQNKIIMKQNELILRELESRTPAVKSK
Ga0209237_100017526	F002500	N/A	MLGFIVQPLAITLDDIDLSLISALIGLAVTIPVTYLIVDRVVARHDRKKLEPVEKLAKERLRSKLGVGFLTTFLITLVIDITSAVGEKKSLSKDLISLHIEKLKGAQSDLEMLLGVYNNVLDVRATHLTSSIILFIEHLQEDFEYLSQIYPKPLTKVHASHIEDIILKTVKLTKEELEVLGTDSVQIRALEDWLTNYTRTRVAPTEPREMVEVSGKHQIG
Ga0209237_100017532	F077108	N/A	LPTTTPYSVRIPKDLLDEMRRYYDRMDPPKPTFSAILSHIVKMGWDSYMTRERDGNKTPRPLVASFPKRIEERAFKAS