NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1050831

Scaffold Ga0209235_1050831


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1050831 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1994
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016387Metagenome / Metatranscriptome247N
F022177Metagenome / Metatranscriptome215Y
F029395Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10508312F022177GGCGGMKDTRGRVTESYEWTAFMKLKGQTSLKNEEEILGEFGGFVQSLQQVGVDYNIIVLVEGKTPRALRSDYNAGTTEARIAREGAGA
Ga0209235_10508313F029395N/AMSATLANNGKREGLPYPENREGETDGRLKDLLVDLIDSSKALDVRVWLDGVYTDIGDEQVIGDWMNDRDVYFKVEGRIDKKNGS
Ga0209235_10508314F016387N/ASCEAKVTLAPTRTMLELKSAPVSSSRSVTRTLRLDEDVEAGIIEMAEREQFSFNLLANKALRKLVEWEDKAAKFGFIQVPTSLLEKVFSILTDDEARDLGREAGTNTLPEMVLFWFKKFNPETALKAMEMIGSYGNSFRLQYTLDGETDTVVLKHDRGPRVSAFYAELLVSLFKPMSARVEIHETDGQVVATITRPVKSVAGEPRDSPLIPSFAGAKNGRGYKR

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