Scaffold Ga0209235_1039552

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1039552
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2360
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10395522	F001571	GAG	VSGSVPEKRLALIHRVIVPDKECPKEYALLVTDSRSIFIRLEKTRSSYWLRGEMKFGTALVTDVIPKTLEDYERIGLESLTGDKTNLTVPHEDVTSLALKKEEPQFRAREFFVWLTMRRQGHRFQVYHFEMNCLQSSNSETVIKFYMVPLGAYFKPRRQTQTREMILQEYATVALEIFQKVLPARIISS
Ga0209235_10395523	F020766	AGG	MDLVTGGIVLFTIMVAAGIIPLIMALRVKTHSLRILSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPVSLLLLIGLGAYYSKVGIA
Ga0209235_10395524	F017116	GGA	MASDPIIAMFETFNLVLILIAFAIFTRLAFKGKSLGSFRFQLSIFLLIWVISEIPHIAESIGFLAATNYEDTGLYLHAASMTVFAMFVGWRSLRFLTIHQPTPTSTVSIPTDTPKVLKS
Ga0209235_10395525	F011479	AGG	MSAVSFEDLVSQSVSETMSKILGSTTWKSVNFFFDTKTAASEPEAFAALLDKVFGFTAKVLQKKIAETLLNKVGAVQPSSTQDFRQILRLAKAKFPRAPVPGQIGS