Scaffold Ga0209235_1035647

Overview

Basic Information

• Taxon OID: 3300026296
• Scaffold ID: Ga0209235_1035647
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2525
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010022	Metagenome	309	Y
F014723	Metagenome	260	N
F071052	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10356471	F071052	N/A	MITAMALLVSPTYSATMNPQENVNLYTGNKLIIDSNQPSIKSVVVRGNLTAAILSNNAYPAKNFTLTTNSTQLYTVDLLLSYQAPYTSEIVISDPSSGSRTQYTSYFVSGGELNLTIFASFQAAPSTGPNTPLGWASFYGWVSQFGGAFPFWIKILYAVLGAQF
Ga0209235_10356472	F014723	N/A	LRWEVLRGWIPAIIFAAVCVGLELLFFYNALNTGFVDKTVSIPVGSWTLPISIALFLSLGNALVVVTLWMNVFESTAYVKAGPDRQVRRILYPLRMIRTAALVLAPFTIILFAPYLVEANWFVNAVASIQAFKQTTESFYNWAFNVSQIDGATRFIISQMLAALGALTIAGLQLWRVKGTKNLVRAFQRRK
Ga0209235_10356474	F010022	N/A	MRKNIVAAGITLLALALLFGVSYPDGLLFSIPISLLNIILGLVTRTPPGLEIQPESANIRLVIDRGVVRASIYQLVFLNSKLVLKRLSSVMVTVVLAFVLAVIGLEILGIAGALMGGITGFSLQEFLTQRMRNKIGSEMQLTSVGGSDVEIEYDDLAEVRLVKSRLYLITHSNSLSASFPRGYSGKIKPMLANIFGSKFTDEESVRAAEAAEKENEKGQHPRGDRGKLSRR